Index

A

add_obs_error() (in module openghg_inversions.inversion_data.get_data) add_suffix() (in module openghg_inversions.postprocessing.utils) add_variable_attrs() (in module openghg_inversions.postprocessing.make_paris_outputs) adjust_flux_start_date() (in module openghg_inversions.inversion_data.getters) align() (openghg_inversions.postprocessing.countries.CountryRegions method)

align_sparse_lat_lon() (in module openghg_inversions.array_ops) all_param() (in module openghg_inversions.config.config) all_parameters_in_param_type() (in module openghg_inversions.config.config) all_region_countries_present_in() (openghg_inversions.postprocessing.countries.CountryRegions method) areagrid() (in module openghg_inversions.utils)

B

basic_output() (in module openghg_inversions.postprocessing.make_outputs) basis (openghg_inversions.postprocessing.inversion_output.InversionOutput attribute) basis_functions_wrapper() (in module openghg_inversions.basis)

bayes_r2_by_site() (in module openghg_inversions.postprocessing.diagnostics) bayes_r2_by_site_resample() (in module openghg_inversions.postprocessing.diagnostics) bucketbasisfunction() (in module openghg_inversions.basis)

C

calculate_DIC() (in module openghg_inversions.hbmcmc.hbmcmc_post_process) calculate_stats() (in module openghg_inversions.postprocessing.stats) check_and_create_folder() (in module openghg_inversions.hbmcmc.hbmcmc_output) check_missing_dates() (in module openghg_inversions.hbmcmc.hbmcmc_post_process) check_platform() (in module openghg_inversions.hbmcmc.hbmcmc_post_process) code_version() (in module openghg_inversions.config.version) combine_datasets() (in module openghg_inversions.utils) combine_scenario_attrs() (in module openghg_inversions.inversion_data.serialise) convert() (in module openghg_inversions.config.config) convert_idata_to_dataset() (in module openghg_inversions.postprocessing.inversion_output)

convert_suffixes_to_dim() (in module openghg_inversions.postprocessing.make_outputs) convert_time_to_unix_epoch() (in module openghg_inversions.postprocessing.make_paris_outputs) convert_to_hours() (in module openghg_inversions.convert) convert_to_list() (in module openghg_inversions.inversion_data.get_data) copy_config_file() (in module openghg_inversions.hbmcmc.hbmcmc_output) Countries (class in openghg_inversions.postprocessing.countries) country_emissions() (in module openghg_inversions.hbmcmc.hbmcmc_post_process) country_emissions_mult() (in module openghg_inversions.hbmcmc.hbmcmc_post_process) CountryRegions (class in openghg_inversions.postprocessing.countries) create_bc_sensitivity() (in module openghg_inversions.hbmcmc.inversionsetup)

D

daily_median() (in module openghg_inversions.filters) data_processing_surface_notracer() (in module openghg_inversions.inversion_data) (in module openghg_inversions.inversion_data.get_data) daytime() (in module openghg_inversions.filters) daytime9to5() (in module openghg_inversions.filters)

define_mcmc_function() (in module openghg_inversions.hbmcmc.run_hbmcmc) define_output_filename() (in module openghg_inversions.hbmcmc.hbmcmc_output) define_stations() (in module openghg_inversions.hbmcmc.hbmcmc_post_process) Diagnostic (class in openghg_inversions.postprocessing.diagnostics) domain (openghg_inversions.postprocessing.inversion_output.InversionOutput attribute)

E

end_date (openghg_inversions.postprocessing.inversion_output.InversionOutput attribute) end_time (openghg_inversions.postprocessing.inversion_output.InversionOutput property) eval_check() (in module openghg_inversions.config.config)

extract_hbmcmc_files() (in module openghg_inversions.hbmcmc.hbmcmc_post_process) extract_mcmc_type() (in module openghg_inversions.hbmcmc.run_hbmcmc) extract_params() (in module openghg_inversions.config.config)

F

filter_data_vars_by_prefix() (in module openghg_inversions.postprocessing.inversion_output) filtering() (in module openghg_inversions.filters) find_param_key() (in module openghg_inversions.config.config) fixed_basis_expected_param() (in module openghg_inversions.hbmcmc.run_hbmcmc) fixed_outer_regions_basis() (in module openghg_inversions.basis) fixedbasisMCMC() (in module openghg_inversions.hbmcmc.hbmcmc) flatten_post_prior() (in module openghg_inversions.postprocessing.make_outputs)

flux (openghg_inversions.postprocessing.inversion_output.InversionOutput attribute) fp_all_from_dataset() (in module openghg_inversions.inversion_data.serialise) from_datatree() (openghg_inversions.postprocessing.inversion_output.InversionOutput class method) from_file() (openghg_inversions.postprocessing.countries.Countries class method) (openghg_inversions.postprocessing.countries.CountryRegions class method) func (openghg_inversions.postprocessing.diagnostics.Diagnostic attribute) (openghg_inversions.postprocessing.stats.StatsFunction attribute)

G

generate_from_template() (in module openghg_inversions.config.config) generate_param_dict() (in module openghg_inversions.config.config) get_area_grid() (in module openghg_inversions.postprocessing.countries) get_country() (in module openghg_inversions.utils) get_country_file_path() (in module openghg_inversions.utils) get_country_trace() (openghg_inversions.postprocessing.countries.Countries method) get_data_var_attrs() (in module openghg_inversions.postprocessing.make_paris_outputs) get_flat_basis() (openghg_inversions.postprocessing.inversion_output.InversionOutput method) get_flux_data() (in module openghg_inversions.inversion_data.getters) get_footprint_data() (in module openghg_inversions.inversion_data.getters) get_footprint_to_match() (in module openghg_inversions.inversion_data.getters)

get_fp_indexer() (in module openghg_inversions.inversion_data.getters) get_model_data() (openghg_inversions.postprocessing.inversion_output.InversionOutput method) get_model_err() (openghg_inversions.postprocessing.inversion_output.InversionOutput method) get_obs_and_errors() (openghg_inversions.postprocessing.inversion_output.InversionOutput method) get_obs_data() (in module openghg_inversions.inversion_data.getters) get_parameters() (in module openghg_inversions.postprocessing.utils) get_total_err() (openghg_inversions.postprocessing.inversion_output.InversionOutput method) get_trace_dataset() (openghg_inversions.postprocessing.inversion_output.InversionOutput method) get_value() (in module openghg_inversions.config.config) get_x_to_country_mat() (openghg_inversions.postprocessing.countries.Countries method) get_xr_dummies() (in module openghg_inversions.array_ops)

H

hbmcmc_extract_param() (in module openghg_inversions.hbmcmc.run_hbmcmc)

hdi() (in module openghg_inversions.postprocessing.stats)

I

infer_flux_frequency() (in module openghg_inversions.postprocessing.make_paris_outputs) inferpymc() (in module openghg_inversions.hbmcmc.inversion_pymc)

inferpymc_postprocessouts() (in module openghg_inversions.hbmcmc.inversion_pymc) InversionOutput (class in openghg_inversions.postprocessing.inversion_output)

L

list_check() (in module openghg_inversions.config.config) list_filters() (in module openghg_inversions.filters) load() (openghg_inversions.postprocessing.inversion_output.InversionOutput class method)

load_merged_data() (in module openghg_inversions.inversion_data) (in module openghg_inversions.inversion_data.serialise) local_influence() (in module openghg_inversions.filters) lognormal_mu_sigma() (in module openghg_inversions.hbmcmc.inversion_pymc)

M

make_combined_scenario() (in module openghg_inversions.inversion_data.serialise) make_concentration_outputs() (in module openghg_inversions.postprocessing.make_outputs) make_country_outputs() (in module openghg_inversions.postprocessing.make_outputs) make_flux_outputs() (in module openghg_inversions.postprocessing.make_outputs) make_global_attrs() (in module openghg_inversions.postprocessing.make_paris_outputs) make_inv_out_for_fixed_basis_mcmc() (in module openghg_inversions.postprocessing.inversion_output) make_inv_out_from_rhime_outputs() (in module openghg_inversions.postprocessing.inversion_output) make_offset() (in module openghg_inversions.hbmcmc.components) make_paris_flux_outputs_from_rhime() (in module openghg_inversions.postprocessing.make_paris_outputs) make_paris_outputs() (in module openghg_inversions.postprocessing.make_paris_outputs) make_replace_names_dict() (in module openghg_inversions.postprocessing.utils) mean() (in module openghg_inversions.postprocessing.stats) median() (in module openghg_inversions.postprocessing.stats) merge() (openghg_inversions.postprocessing.countries.Countries method) merged_scenario_data() (in module openghg_inversions.inversion_data.scenario) mode() (in module openghg_inversions.postprocessing.stats) mode_kde() (in module openghg_inversions.postprocessing.stats) model (openghg_inversions.postprocessing.inversion_output.InversionOutput attribute) module openghg_inversions openghg_inversions.array_ops openghg_inversions.basis openghg_inversions.basis.algorithms openghg_inversions.config openghg_inversions.config.config openghg_inversions.config.paths openghg_inversions.config.version openghg_inversions.convert openghg_inversions.filters openghg_inversions.hbmcmc openghg_inversions.hbmcmc.components openghg_inversions.hbmcmc.hbmcmc openghg_inversions.hbmcmc.hbmcmc_output openghg_inversions.hbmcmc.hbmcmc_post_process openghg_inversions.hbmcmc.inversion_pymc openghg_inversions.hbmcmc.inversionsetup openghg_inversions.hbmcmc.post_process_inputs openghg_inversions.hbmcmc.run_hbmcmc openghg_inversions.inversion_data openghg_inversions.inversion_data.get_data openghg_inversions.inversion_data.getters openghg_inversions.inversion_data.scenario openghg_inversions.inversion_data.serialise openghg_inversions.model_error openghg_inversions.postprocessing openghg_inversions.postprocessing.countries openghg_inversions.postprocessing.diagnostics openghg_inversions.postprocessing.inversion_output openghg_inversions.postprocessing.make_outputs openghg_inversions.postprocessing.make_paris_outputs openghg_inversions.postprocessing.stats openghg_inversions.postprocessing.utils openghg_inversions.utils

mol2g() (in module openghg_inversions.convert) monthly_bcs() (in module openghg_inversions.hbmcmc.inversionsetup)

N

name (openghg_inversions.postprocessing.stats.StatsFunction attribute) ncdf_encoding() (in module openghg_inversions.hbmcmc.hbmcmc_output)

nighttime() (in module openghg_inversions.filters) nmeasure_to_site_time() (openghg_inversions.postprocessing.inversion_output.InversionOutput method) noon() (in module openghg_inversions.filters)

O

obs (openghg_inversions.postprocessing.inversion_output.InversionOutput attribute) obs_err (openghg_inversions.postprocessing.inversion_output.InversionOutput attribute) obs_repeatability (openghg_inversions.postprocessing.inversion_output.InversionOutput attribute) obs_variability (openghg_inversions.postprocessing.inversion_output.InversionOutput attribute) open_config() (in module openghg_inversions.config.config) open_ds() (in module openghg_inversions.hbmcmc.hbmcmc_post_process) (in module openghg_inversions.utils) openghg_inversions module openghg_inversions.array_ops module openghg_inversions.basis module openghg_inversions.basis.algorithms module openghg_inversions.config module openghg_inversions.config.config module openghg_inversions.config.paths module openghg_inversions.config.version module openghg_inversions.convert module openghg_inversions.filters module openghg_inversions.hbmcmc module openghg_inversions.hbmcmc.components module openghg_inversions.hbmcmc.hbmcmc module openghg_inversions.hbmcmc.hbmcmc_output module openghg_inversions.hbmcmc.hbmcmc_post_process module openghg_inversions.hbmcmc.inversion_pymc module

openghg_inversions.hbmcmc.inversionsetup module openghg_inversions.hbmcmc.post_process_inputs module openghg_inversions.hbmcmc.run_hbmcmc module openghg_inversions.inversion_data module openghg_inversions.inversion_data.get_data module openghg_inversions.inversion_data.getters module openghg_inversions.inversion_data.scenario module openghg_inversions.inversion_data.serialise module openghg_inversions.model_error module openghg_inversions.postprocessing module openghg_inversions.postprocessing.countries module openghg_inversions.postprocessing.diagnostics module openghg_inversions.postprocessing.inversion_output module openghg_inversions.postprocessing.make_outputs module openghg_inversions.postprocessing.make_paris_outputs module openghg_inversions.postprocessing.stats module openghg_inversions.postprocessing.utils module openghg_inversions.utils module openghginv (openghg_inversions.config.paths.Paths attribute)

P

params (openghg_inversions.postprocessing.diagnostics.Diagnostic attribute) (openghg_inversions.postprocessing.stats.StatsFunction attribute) paris_concentration_outputs() (in module openghg_inversions.postprocessing.make_paris_outputs) paris_flux_output() (in module openghg_inversions.postprocessing.make_paris_outputs) parse_prior() (in module openghg_inversions.hbmcmc.inversion_pymc) Paths (class in openghg_inversions.config.paths) pblh() (in module openghg_inversions.filters) pblh_inlet_diff() (in module openghg_inversions.filters) pblh_min() (in module openghg_inversions.filters) percentile_error_method() (in module openghg_inversions.model_error)

period_midpoint (openghg_inversions.postprocessing.inversion_output.InversionOutput property) plot_abs_map() (in module openghg_inversions.hbmcmc.hbmcmc_post_process) plot_country_timeseries() (in module openghg_inversions.hbmcmc.hbmcmc_post_process) plot_diff_map() (in module openghg_inversions.hbmcmc.hbmcmc_post_process) plot_map() (in module openghg_inversions.hbmcmc.hbmcmc_post_process) plot_map_mult() (in module openghg_inversions.hbmcmc.hbmcmc_post_process) plot_multi_country_timeseries() (in module openghg_inversions.hbmcmc.hbmcmc_post_process) plot_scale_map() (in module openghg_inversions.hbmcmc.hbmcmc_post_process) plot_timeseries() (in module openghg_inversions.hbmcmc.hbmcmc_post_process) prefix() (in module openghg_inversions.convert)

Q

quadtree_algorithm() (in module openghg_inversions.basis.algorithms)

quadtreebasisfunction() (in module openghg_inversions.basis) quantiles() (in module openghg_inversions.postprocessing.stats)

R

read_netcdfs() (in module openghg_inversions.utils) region_countries_missing_from() (openghg_inversions.postprocessing.countries.CountryRegions method) region_names (openghg_inversions.postprocessing.countries.CountryRegions property) register_diagnostic() (in module openghg_inversions.postprocessing.diagnostics)

register_filter() (in module openghg_inversions.filters) register_stat() (in module openghg_inversions.postprocessing.stats) rename_by_replacement() (in module openghg_inversions.postprocessing.utils) rerun_output() (in module openghg_inversions.hbmcmc.hbmcmc) residual_error_method() (in module openghg_inversions.model_error)

S

sample_predictive_distributions() (openghg_inversions.postprocessing.inversion_output.InversionOutput method) save() (openghg_inversions.postprocessing.inversion_output.InversionOutput method) set_clevels() (in module openghg_inversions.hbmcmc.hbmcmc_post_process) setup_min_error() (in module openghg_inversions.model_error) shift_measurement_time_to_midpoint() (in module openghg_inversions.postprocessing.make_paris_outputs) sigma_freq_indicies() (in module openghg_inversions.hbmcmc.inversionsetup) site_indicators (openghg_inversions.postprocessing.inversion_output.InversionOutput attribute) site_names (openghg_inversions.postprocessing.inversion_output.InversionOutput attribute) six_hr_mean() (in module openghg_inversions.filters)

sort_data_vars() (in module openghg_inversions.postprocessing.make_outputs) sparse_xr_dot() (in module openghg_inversions.array_ops) species (openghg_inversions.postprocessing.inversion_output.InversionOutput attribute) start_date (openghg_inversions.postprocessing.inversion_output.InversionOutput attribute) start_time (openghg_inversions.postprocessing.inversion_output.InversionOutput property) StatsFunction (class in openghg_inversions.postprocessing.stats) stdev() (in module openghg_inversions.postprocessing.stats) str_check() (in module openghg_inversions.config.config) subplot_fmt() (in module openghg_inversions.hbmcmc.hbmcmc_post_process) summary() (in module openghg_inversions.postprocessing.diagnostics)

T

times (openghg_inversions.postprocessing.inversion_output.InversionOutput attribute) to_datatree() (openghg_inversions.postprocessing.inversion_output.InversionOutput method)

to_dense() (in module openghg_inversions.array_ops) to_dict() (openghg_inversions.postprocessing.countries.CountryRegions method) trace (openghg_inversions.postprocessing.inversion_output.InversionOutput attribute)

U

unbiasedDivergingCmap() (in module openghg_inversions.hbmcmc.hbmcmc_post_process)

update_attrs() (in module openghg_inversions.postprocessing.utils)

W

weighted_algorithm() (in module openghg_inversions.basis.algorithms)